FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56052751
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGGAAGATCAGGTCAACGTTGCTG924070.16485720745445662No Hit
TGACAACGTCTAGTGTAGAGGCTACCTT914350.163123126641902No Hit
GGAATAATCTACCTGCATTCGCAATATT873990.15592276639553337No Hit
TGGCTGGAGCCAGAACGCACCGGCCTTT865760.15445450661288684No Hit
GACGGCTAGAGGTAGATTACCCCGCTTT861720.15373375697474687No Hit
GTGGGTCAGTTGTAGACCGCATTAGATT843240.15043686259038383No Hit
CGACCTTCAGTAGAGCCCACCTAATGTT813570.14514363443107367No Hit
GGGATGACATGAAGTAGTTAAGCCACTT778170.13882815492856007No Hit
GCACTCTAGAGTCTGGACCGGCATGCTT739380.13190788798216166No Hit
TAAGTGCTCGAACGGAGCGGTTTGGCTT736480.1313905181924077No Hit
CCGGTAGTCGGATGTTTACCCTGCGATT734910.1311104248924375No Hit
CTACGTCAGTACGACGAATGTATTCATT727890.1298580331944814No Hit
GATGAGGCATGTCGATGTAACACGGTTT725280.12939240038370284No Hit
CGGGTCAGTACACCGCGCAAGCGGTCTT717640.12802939859276488No Hit
CCAATCCGTTAAGAACGAATCGTACTTT707610.12624001273371935No Hit
GGGCACTTCTCTAGGAGGGCCCTCAATT699260.12475034454597957No Hit
TGACTTTGTCACCTAAATAAACTCAGTT678990.12113410811897529No Hit
ACATACGAGAGTTGGCTCAGCTCACGTT651760.11627618419656155No Hit
CAGCTAAGTGACAAATGCCACCAGACTT650840.1161120530908465No Hit
CCTTACGCATTCCTGCTAGTATACCCTT645500.11515937906419617No Hit
TGACAACTCTTACCTAACCACAAGGCTT626150.11170727374290691No Hit
GACTACATCTCAAACGGGAGAACTTGTT625950.11167159306775147No Hit
ACGGCCATCCAGAAGGTTCAAGTGGGTT613190.10939516599283415No Hit
TGACAACTCGACGGAAGCCAGGTCAGTT610590.10893131721581337No Hit
GCACTCTGTCTGCGGTAAGAGCATGATT603860.10773066249683268No Hit
GATCGCGTCACCTCGTAGAGCGCAGCTT602760.10753441878347772No Hit
TGCCCATAGTTGTCGTATTTGAACCGTT602080.10741310448794922No Hit
GCCAAATAGAAGAAGCCGCAAACTGCTT595980.10632484389570818No Hit
GCCTCTAAGACGCAACCATTTGGCACTT588800.10504390765762772No Hit
TCAGCTCAGTCTCAACTAAGGACTTATT583570.10411085800231284No Hit
GGCAATTAGTTGTCGTATCTTTCCGGTT581490.10373977898069625No Hit
GACCAATCATGACATAAATCCCCTGGTT578260.1031635360769358No Hit
GCCTCTAAGACGCAACTACTCACATCTT570770.10182729479236442No Hit
GGGAATGTCTCGAGTAACACCACACCTT570290.10174166117199136No Hit
GCCAAATTCACCACCTACTATTTCAATT570010.10169170822677373No Hit
ACTGCTCAGGACCACACCAGTCCGTGTT568060.10134382164400815No Hit
CTGCTGTTCACAACGTGAATCGCGTATT567400.1012260754159952No Hit
CTCGTACCAATCGGTTCTGGTGAAAATT565090.10081396361794981No Hit
TCGCGAGAGTCAATAGAGGCCATCGATT565090.10081396361794981No Hit
AGCTTGAGTGGAAAGACTCGAAAAGATT563600.10054814258804175No Hit
GCAATCACAGACACTTAGGGTGGCCGTT562350.10032513836832023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)