FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50987596
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGATTCTCACATTCCAGGTCTCTTT892860.17511317850718047No Hit
GGACGTCTCCTCGCATGGACAACAGGTT734280.14401149644317415No Hit
GCTACAGTCCAAGTTCAGCCATCGATTT629230.12340844624249396No Hit
ACATACGCAATCTGCAACCCAGCACGTT625030.1225847164867314No Hit
TGACTAGAGCGTGAACAATGTCCCTTTT613630.12034887857823302No Hit
CACACAATCAGCTTAGCCAATAGCTTTT595250.11674408026611022No Hit
TGCGCTAGCTAGCCCACGTTGTCGTTTT591510.11601056853121688No Hit
GACACGCCACCAGTTACTGAGAGACTTT581930.11413168018354895No Hit
TAGTTGGTCGCCAGCACTTGTGGTTTTT580070.11376688557742554No Hit
TGCCAAACACCAGGTCCACCATGGGTTT565770.11096228188518635No Hit
GGCTGGTTCCTTGCCAAGTACCTCTGTT565050.11082107106991276No Hit
TGGTTCCTCGGAGGTATGATCACATCTT557650.10936973769071208No Hit
CAGCTAAAGCACGCCTAGGAGCTTAATT551450.10815375567030067No Hit
AGGTCCGAGGCTCATTTCAATAACCCTT540100.10592772406841852No Hit
GACAGAGAGCTAACTCGCACCCTGTGTT520250.10203462034177882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)