FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125304845
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTGAGCATCAGTTC12069770.9632325070910066No Hit
GCTTGACTCTAGGAAC9338230.7452409362143978No Hit
TCCTCCATCGCGAGGT9259110.7389267350356644No Hit
CACTCGCCATCAAGCA8566220.6836303895511782No Hit
ATCCTCAAGCTCCTAA6125810.48887255716249434No Hit
TCCTCAAAGCCTAATT6077760.4850379089491711No Hit
TTGATCAGTGGATTGA4208180.33583537811327246No Hit
GTGAGTTAGTCCTGCG3954720.31560790805814415No Hit
TTTAGGCGTAAGTACG3610190.288112562606817No Hit
TGTGGCGCAAGGTGCT3528100.2815613394677596No Hit
CGTGTGTTCTTAGGTT3480260.27774345038294407No Hit
CATGGCTTCCACAATT3389870.2705298426409609No Hit
CCATATTAGTTACAAG3339030.26647253743460597No Hit
GCTGGACAGCCCTTGG2834540.2262115243827962No Hit
CTTTACTGTCAGTAAG2789130.22258756235642765No Hit
ACAGTAATCAAACCTT2654810.2118681045413687No Hit
TTGCTGATCGATAAGC2533860.20221564457463714No Hit
TCATCATAGCTTGCTA2284600.18232335708966402No Hit
GGATTAGGTGCAAGTA2221880.1773179640420129No Hit
CGTTATAGTGCAATAG2196370.17528212895518924No Hit
ACATTGTTCGTGCTGT2049220.16353876819368No Hit
TGAATCTTCGGTCCAT1958890.15632994877412762No Hit
TACCTTTGTTATGTCA1610590.12853373706339927No Hit
GTCACACTCTTTGGGC1600110.12769737674548817No Hit
GTGGACCAGCAAGTGT1574810.1256783007871723No Hit
TTAGGATCAGGAATAA1558310.12436151211870539No Hit
GCCAATTGTGAACGGT1533910.1224142609968513No Hit
TGCATTTAGTTAACGA1504550.12007117522071872No Hit
CAGCTAACAAGCCTCC1424010.11364365041112337No Hit
AGCTAGGTCACAAATG1355900.10820810639843974No Hit
GAAGGTGCAGCCAGTG1344960.10733503560855927No Hit
GCTATTAGTTGAAGCA1337060.10670457315517208No Hit
TACCGGCGTATCGCTG1277440.10194657676644507No Hit
TAGCTAAAGTCATCAT1268700.10124907779902684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)