FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124997517
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTGAGCATCAGTTC11907850.952646923378486No Hit
GCTTGACTCTAGGAAC9300840.7440819804444596No Hit
TCCTCCATCGCGAGGT9266710.7413515262067165No Hit
CACTCGCCATCAAGCA8543860.6835223774885064No Hit
ATCCTCAAGCTCCTAA6116120.4892993194416814No Hit
TCCTCAAAGCCTAATT6078620.4862992598484976No Hit
TTGATCAGTGGATTGA4160320.33283221137904684No Hit
GTGAGTTAGTCCTGCG3950650.3160582781816378No Hit
TTTAGGCGTAAGTACG3611340.2889129389666196No Hit
TGTGGCGCAAGGTGCT3510850.2808735792727787No Hit
CGTGTGTTCTTAGGTT3459380.27675589747914753No Hit
CATGGCTTCCACAATT3384030.27072777773657697No Hit
CCATATTAGTTACAAG3310430.26483966077502163No Hit
GCTGGACAGCCCTTGG2847550.22780852518854436No Hit
CTTTACTGTCAGTAAG2797630.2238148458580981No Hit
ACAGTAATCAAACCTT2641110.21129299712409488No Hit
TTGCTGATCGATAAGC2517440.2013992005937206No Hit
TCATCATAGCTTGCTA2287280.18298603483459594No Hit
GGATTAGGTGCAAGTA2216070.17728912167111288No Hit
CGTTATAGTGCAATAG2191580.17532988275279102No Hit
ACATTGTTCGTGCTGT2040430.16323764255253168No Hit
TGAATCTTCGGTCCAT1953070.15624870372425076No Hit
TACCTTTGTTATGTCA1607520.12860415459292682No Hit
GTCACACTCTTTGGGC1585370.12683211939321962No Hit
GTGGACCAGCAAGTGT1563290.12506568430475304No Hit
TTAGGATCAGGAATAA1553530.12428486879463374No Hit
GCCAATTGTGAACGGT1531790.12254563424647867No Hit
TGCATTTAGTTAACGA1504980.12040079164132517No Hit
CAGCTAACAAGCCTCC1415160.11321504890373144No Hit
AGCTAGGTCACAAATG1354690.10837735280773617No Hit
GAAGGTGCAGCCAGTG1338800.10710612755611777No Hit
GCTATTAGTTGAAGCA1334730.1067805210882709No Hit
TAGCTAAAGTCATCAT1270060.10160681831783906No Hit
TACCGGCGTATCGCTG1268910.10151481649031475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)