FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107573679
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTAAAGATTCAAG22200082.063709283383345No Hit
GATCAGTAGTTAGTAG13016091.2099697733680745No Hit
ACAAAGCTCAAACCAA11615721.079792018640545No Hit
GAAACTGGTGAACCGG6385870.5936275545619296No Hit
CGTAAGGTCTTGTTCC5572710.51803657286835No Hit
TGTGCGGCAATCGCCC4519320.42011392024623423No Hit
CACGGTAAGAGAGGCG4244730.39458815943256903No Hit
GGTCGAGGTGAGCATA4064940.3778749632612267No Hit
GTAGCCTTCAGGTTGG3840730.35703250420579186No Hit
AATACCCGTCACGATT2945820.27384207990134835No Hit
ACGTAATCATGGAGGA2899060.2694952916874768No Hit
CTACTGATCAAGCGCA2827880.26287843144232337No Hit
GAAGGAATCGCCTGTG2800770.2603582982413384No Hit
AACCTTTAGGCTAGCA2337540.2172966493039622No Hit
AAGCCATAGTTCGCGT2255180.2096405013720875No Hit
CCGAAGTCAGTACCGG2167380.2014786535282483No Hit
CTGCTAATCGCGAAAT2155950.20041612595586697No Hit
GTAATCCGTTGCTCAG1862130.1731027531372242No Hit
ATCACAAAGCGATGCA1598120.1485605042846959No Hit
TAGGGTTAGTCACTCA1592520.14803993084590888No Hit
CGCCTTTGTTTATGGC1591830.14797578876148693No Hit
GTAAGTATCAGCTAGG1534510.1426473477773313No Hit
TATGTTGGTAACGTGA1527050.1419538695892329No Hit
TTACTAGGTTTCCGGA1505000.139904111674009No Hit
AACATAGTCACCTGGT1429620.13289682134976533No Hit
AGTAACTCAGCCAAAC1416380.1316660370052046No Hit
GTTGAATCAAATACCG1415570.13159073977566577No Hit
GGCATGTCATGCCTGC1346660.1251848976923063No Hit
AAACTAGTCAGTTTAC1329710.1236092334445492No Hit
GTAGGCGGTTACAACC1317680.12249093014658353No Hit
GCACGTAAGATGAACC1301680.12100357746433493No Hit
GTGCGAGGTTGCTCAG1272650.11830496194148012No Hit
TCCTTGTTCAGGACCA1258290.11697006290916201No Hit
GGACTTACAAGCTCAA1256000.11675718555651518No Hit
GAGCTTGAGATTCGTT1254510.11661867583798077No Hit
CCCGTTACATCATCAC1251510.11633979721005917No Hit
AGTCATTTCAATCGGG1241200.11538138432543522No Hit
GTTACCGGTTGCGAGG1224640.11384197429930792No Hit
GTGCTGGCAACCAAAT1217600.11318753911911854No Hit
AGGGCTTCAGTAGGAG1197950.11136088410623197No Hit
GTCGGTTTCGCTATAT1184730.11013195895252406No Hit
CTGTGGCGTCCTCCAT1181020.10978707904932766No Hit
TGAACCACATAGCTTC1176710.10938642342054697No Hit
GCTCGATTCTTGCAGC1173490.10908709369324443No Hit
ATGCGATAGCCATCAC1167670.10854606915507649No Hit
TCGCGCTCACTTGCTG1158870.10772802517983976No Hit
ACTTAGTTCGCAATTT1157750.10762391049208236No Hit
ACCGCTAGTACGTTTA1156800.10753559892657386No Hit
TTGATGAAGGAACCTG1156290.10748818955982717No Hit
ATCACTAGTAATCCAC1136070.1056085476076355No Hit
TTCGCGCCAGGTTGTA1108320.10302892029936059No Hit
GACTCAACAACCAACA1096680.10194687122302473No Hit
GGCGCTTGTATGGTCT1088240.10116229268313859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)