FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98182390
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCCTAGAACCTGG20682112.106498935297868No Hit
CCGCCATCACAACATG13518641.376890499406258No Hit
GTCAAGCCACGATTCT10887461.1089015046384592No Hit
CGGTAATAGGACGAAA7216000.7349586825091546No Hit
TTCTATCGTTAACTGC3867730.39393316866700845No Hit
TAGGATATCCACCTGG3769230.3839008196887446No Hit
CCTTGTTTCACACAAA3612470.36793461638079905No Hit
CCCTGGATCCCTGGTG3104450.31619213995503676No Hit
GCCTCATAGATTCCTG3022860.3078820957607571No Hit
TGTCAATTCCCTGGTG2647730.26967463309866463No Hit
AGGGTCCAGGTAAGTC2484490.2530484336345856No Hit
TGGTCCTAGGCACTAG2437720.24828485026693686No Hit
TCGATTAGTGCTTCCT2175910.22161917223648764No Hit
AGTGATTCATAAGCCA2030950.20685481378076045No Hit
CTCGATTCAGTTGGGT1982090.201878361282507No Hit
CATAACCGTCACCAGC1858540.1892946382747456No Hit
GATTGGCCACTTCAAC1839790.18738492717482227No Hit
CGGGTCACAGAATCTG1797840.18311226687392718No Hit
TGGACCAAGTCAACAA1727480.17594601231442827No Hit
ACAGGTTAGCCTAATT1719100.17509249876683589No Hit
GTTGAGGTCGACATTT1707360.17389676499013723No Hit
CGTCCAAGTAATCCCG1480060.1507459738961335No Hit
GGGTCACAGATTCGTT1438760.14653951691336908No Hit
AGTAATGTCTTTGGTG1438050.14646720251971865No Hit
TAGTGTGCAGGTTATG1391040.1416791748499909No Hit
AATTGAGTCTTGTCGA1367600.13929178134694012No Hit
ATGTTGCGTTTATGGC1322850.1347339375217898No Hit
TTAGGCCTCCGTCCCT1304400.13285478179946525No Hit
CGTGTGTTCCAAATTC1295410.13193913898408868No Hit
TCATTGAGTTCCTGGA1289730.13136062383488525No Hit
TTCCGCACAAGGTGTC1277020.1300660943372839No Hit
CCTCAAGGTCAATTCA1271640.12951813456567923No Hit
GCGCAAATCTAAGTCT1257810.1281095316583758No Hit
AAGTGAACATAGTCAG1232020.12548278769746796No Hit
TTGGCTTCAGCCAGTG1215120.1237615014260704No Hit
GCCTTAATCGCTTTAG1192790.12148716282013505No Hit
TAGCTAAAGGATTATG1188940.12109503547428413No Hit
ACAACCTGTCCGGTTA1181720.12035966938674034No Hit
CGGTCATTCATCACAT1160400.11818820055205419No Hit
CGAGGAACATACTTGC1157670.11791014661590535No Hit
TGACGGATCAAACCAA1149700.11709839208436461No Hit
GATTGTTTCTAGTTGT1131410.1152355325634261No Hit
CCAACAACATCCTGGC1124620.11454396251710719No Hit
TGCAGGTCACTTCAAC1115330.11359776432413185No Hit
TGCTGGAAGGTAAGTC1105720.1126189737283845No Hit
AATGGCCCAATCGTGA1073030.10928945608270485No Hit
TACGCGTTCACCTATG1071910.10917538267300278No Hit
TACCGAACACCTTCAG1069870.1089676061053311No Hit
GCATCTATCGGGATGC1066810.10865594125382362No Hit
CTAGTTGTCAACCGGA1044860.10642030612618006No Hit
ATGCAACAGGAGCAGG1031790.10508911017546019No Hit
GTGGCTTTCAGCCTGT1024430.10433948491170363No Hit
TAACCACGTAATCGCT1005310.10239208884607513No Hit
AACCAGGTCGAAGTTA999490.10179931452065893No Hit
GCCAATACATCAGGAC990650.10089894939408178No Hit
GATCCTTCATGGAGGA986440.10047015559511233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)