FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106709941
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTAAAGATTCAAG22123572.073243579058862No Hit
GATCAGTAGTTAGTAG12980981.2164733555611282No Hit
ACAAAGCTCAAACCAA11580621.0852428453690177No Hit
GAAACTGGTGAACCGG6362760.5962668464037478No Hit
CGTAAGGTCTTGTTCC5533180.5185252609220353No Hit
TGTGCGGCAATCGCCC4484340.4202363864112717No Hit
CACGGTAAGAGAGGCG4231300.3965235066524871No Hit
GGTCGAGGTGAGCATA4018310.3765637917464503No Hit
GTAGCCTTCAGGTTGG3803550.3564382066334382No Hit
AATACCCGTCACGATT2929220.2745030099866703No Hit
ACGTAATCATGGAGGA2869490.2689055933411115No Hit
CTACTGATCAAGCGCA2796410.26205712174463675No Hit
GAAGGAATCGCCTGTG2758360.25849138085457285No Hit
AACCTTTAGGCTAGCA2318830.21730215369531505No Hit
AAGCCATAGTTCGCGT2222300.2082561361363699No Hit
CCGAAGTCAGTACCGG2154280.20188184716548574No Hit
CTGCTAATCGCGAAAT2123570.19900395221847234No Hit
GTAATCCGTTGCTCAG1834190.1718855790577187No Hit
ATCACAAAGCGATGCA1585240.14855598130262296No Hit
TAGGGTTAGTCACTCA1580590.14812022058938257No Hit
CGCCTTTGTTTATGGC1574830.14758043957685255No Hit
GTAAGTATCAGCTAGG1517610.1422182400044622No Hit
TATGTTGGTAACGTGA1512140.14170563546652135No Hit
TTACTAGGTTTCCGGA1504330.14097374489224018No Hit
AACATAGTCACCTGGT1426000.13363328539371977No Hit
AGTAACTCAGCCAAAC1415120.1326136990367186No Hit
GTTGAATCAAATACCG1407590.13190804781721321No Hit
AAACTAGTCAGTTTAC1320770.12377197359709907No Hit
GGCATGTCATGCCTGC1310150.12277675235524683No Hit
GTAGGCGGTTACAACC1304680.12226414781730598No Hit
GCACGTAAGATGAACC1285170.12043582706132319No Hit
GTGCGAGGTTGCTCAG1260380.11811270704385451No Hit
GGACTTACAAGCTCAA1252530.11737706799031966No Hit
TCCTTGTTCAGGACCA1251510.11728148176935081No Hit
GAGCTTGAGATTCGTT1243160.11649898672514494No Hit
AGTCATTTCAATCGGG1237990.1160144957816067No Hit
CCCGTTACATCATCAC1234940.11572867423851353No Hit
GTTACCGGTTGCGAGG1214060.11377196806809217No Hit
GTGCTGGCAACCAAAT1208330.1132349984150024No Hit
AGGGCTTCAGTAGGAG1190100.11152662899513738No Hit
CTGTGGCGTCCTCCAT1179650.11054733879011329No Hit
GTCGGTTTCGCTATAT1172070.10983700197154077No Hit
TGAACCACATAGCTTC1166260.10929253535994364No Hit
ATGCGATAGCCATCAC1156600.10838727762017973No Hit
TCGCGCTCACTTGCTG1152320.1079861903400359No Hit
ACTTAGTTCGCAATTT1151470.10790653515589518No Hit
GCTCGATTCTTGCAGC1149790.10774909902724059No Hit
ACCGCTAGTACGTTTA1148600.10763758176944359No Hit
TTGATGAAGGAACCTG1147350.10752044179276606No Hit
ATCACTAGTAATCCAC1132350.10611476207263576No Hit
GACTCAACAACCAACA1098400.10293324030607422No Hit
TTCGCGCCAGGTTGTA1086500.10181806772810416No Hit
GGCGCTTGTATGGTCT1077650.1009887166932273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)