FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48145627
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTAAAGATTCAAG9020571.873601106077609No Hit
GATCAGTAGTTAGTAG5223891.0850185833076802No Hit
ACAAAGCTCAAACCAA4737640.9840229103257914No Hit
GAAACTGGTGAACCGG2667040.5539526985493408No Hit
CGTAAGGTCTTGTTCC2464720.5119301904615345No Hit
TGTGCGGCAATCGCCC1981400.41154308780733084No Hit
GGTCGAGGTGAGCATA1857990.38591043793032337No Hit
CACGGTAAGAGAGGCG1842390.38267026826756245No Hit
GTAGCCTTCAGGTTGG1723080.3578892014429473No Hit
GAAGGAATCGCCTGTG1318000.2737527958665903No Hit
ACGTAATCATGGAGGA1291450.26823827634439157No Hit
AATACCCGTCACGATT1268370.2634444868689736No Hit
CTACTGATCAAGCGCA1265460.26284007060495856No Hit
AACCTTTAGGCTAGCA1008870.2095455107480478No Hit
AAGCCATAGTTCGCGT995630.20679552059837125No Hit
CTGCTAATCGCGAAAT994890.20664182024257363No Hit
CCGAAGTCAGTACCGG858910.1783983413488415No Hit
GTAATCCGTTGCTCAG828930.17217139990720237No Hit
ATCACAAAGCGATGCA698630.1451076750958088No Hit
GTAAGTATCAGCTAGG672380.13965546652866312No Hit
CGCCTTTGTTTATGGC669390.1390344340099673No Hit
TTACTAGGTTTCCGGA659900.13706333079845445No Hit
TAGGGTTAGTCACTCA657330.13652953361683293No Hit
TATGTTGGTAACGTGA653110.13565302618241945No Hit
GGCATGTCATGCCTGC633680.1316173533268141No Hit
AACATAGTCACCTGGT610200.12674048257799198No Hit
AGTAACTCAGCCAAAC606300.12593044016230176No Hit
GTTGAATCAAATACCG579910.12044915314946465No Hit
GTAGGCGGTTACAACC579400.12034322452587438No Hit
GCACGTAAGATGAACC571590.11872106266265885No Hit
TCGCGCTCACTTGCTG559280.11616423647364692No Hit
GTGCGAGGTTGCTCAG558130.11592537781261007No Hit
AAACTAGTCAGTTTAC555400.11535834812162692No Hit
GGACTTACAAGCTCAA542220.112620820162961No Hit
GTCGGTTTCGCTATAT537690.1116799247416593No Hit
GTGCTGGCAACCAAAT533730.11085742013495847No Hit
TGAACCACATAGCTTC532520.11060609928291099No Hit
CCCGTTACATCATCAC532390.11057909786905465No Hit
GCTCGATTCTTGCAGC531940.11048563143647501No Hit
GTTACCGGTTGCGAGG522210.10846467946091969No Hit
GAGCTTGAGATTCGTT519590.10792049712012267No Hit
AGTCATTTCAATCGGG518200.10763178969504332No Hit
AGGGCTTCAGTAGGAG515920.10715822643663983No Hit
TCCTTGTTCAGGACCA507950.10550283206406263No Hit
CTGTGGCGTCCTCCAT507660.10544259814084465No Hit
ACCGCTAGTACGTTTA504780.10484441297233496No Hit
GGCGCTTGTATGGTCT503410.10455985961092583No Hit
ACTTAGTTCGCAATTT499480.10374358609973029No Hit
ATGCGATAGCCATCAC497570.10334687301922561No Hit
TTCGCGCCAGGTTGTA494790.10276945816906694No Hit
TTGATGAAGGAACCTG491000.10198226310356286No Hit
ATCACTAGTAATCCAC485840.10091051467664965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)