FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63091764
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCCTAGAACCTGG13634032.1609841183074225No Hit
CCGCCATCACAACATG8089081.2821134625432251No Hit
GTCAAGCCACGATTCT6792271.076569994143768No Hit
CGGTAATAGGACGAAA4720720.7482307833396448No Hit
TTCTATCGTTAACTGC2412540.38238588478838537No Hit
TAGGATATCCACCTGG2404710.38114483532272136No Hit
CCTTGTTTCACACAAA2240670.3551446112681205No Hit
CCCTGGATCCCTGGTG2041570.32358740199433955No Hit
GCCTCATAGATTCCTG1912410.3031156332861449No Hit
TGTCAATTCCCTGGTG1571110.24901982452099453No Hit
AGGGTCCAGGTAAGTC1524350.24160839757151187No Hit
TGGTCCTAGGCACTAG1498960.23758410051746218No Hit
TCGATTAGTGCTTCCT1365040.21635787517369146No Hit
AGTGATTCATAAGCCA1253860.1987359237570216No Hit
CTCGATTCAGTTGGGT1250930.19827152082798No Hit
CATAACCGTCACCAGC1161320.18406839916538076No Hit
GATTGGCCACTTCAAC1139870.18066858932649277No Hit
CGGGTCACAGAATCTG1107030.17546347253819058No Hit
TGGACCAAGTCAACAA1083940.17180372385847384No Hit
ACAGGTTAGCCTAATT1081960.1714898952579611No Hit
GTTGAGGTCGACATTT1034260.16392947897288146No Hit
CGTCCAAGTAATCCCG937090.14852810265377903No Hit
AGTAATGTCTTTGGTG913260.14475106449710298No Hit
GGGTCACAGATTCGTT908590.14401087279791383No Hit
TAGTGTGCAGGTTATG863440.13685462971046428No Hit
AATTGAGTCTTGTCGA839170.1330078518647854No Hit
TTAGGCCTCCGTCCCT826880.1310598955515018No Hit
TCATTGAGTTCCTGGA804360.12749049146890234No Hit
TTGGCTTCAGCCAGTG802750.12723530760686924No Hit
GCCTTAATCGCTTTAG798560.12657119556841048No Hit
CCTCAAGGTCAATTCA795690.1261163025969602No Hit
ATGTTGCGTTTATGGC794550.1259356134027256No Hit
TTCCGCACAAGGTGTC789710.12516847682369447No Hit
GCGCAAATCTAAGTCT788230.12493389786977585No Hit
CGTGTGTTCCAAATTC777460.12322686048213836No Hit
ACAACCTGTCCGGTTA759120.12031998344506581No Hit
CGGTCATTCATCACAT755740.11978425583408954No Hit
TAGCTAAAGGATTATG745700.11819292293047948No Hit
AAGTGAACATAGTCAG744570.11801381872917677No Hit
CGAGGAACATACTTGC730390.11576629875176733No Hit
TGACGGATCAAACCAA719370.11401963654083282No Hit
TGCTGGAAGGTAAGTC712910.11299573110683671No Hit
GTGGCTTTCAGCCTGT708860.11235380896942428No Hit
TGCAGGTCACTTCAAC708340.11227138933696638No Hit
CCAACAACATCCTGGC692870.10981940527134412No Hit
GCATCTATCGGGATGC682840.10822965736066598No Hit
GATTGTTTCTAGTTGT681460.10801092833606618No Hit
TACGCGTTCACCTATG671220.10638789557381849No Hit
TACCGAACACCTTCAG670500.10627377608272294No Hit
CTAGTTGTCAACCGGA662210.10495981694219232No Hit
AATGGCCCAATCGTGA655920.10396285638803822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)