FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46343255
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTAAAGATTCAAG8785551.8957559196046976No Hit
GATCAGTAGTTAGTAG5080611.09629977436846No Hit
ACAAAGCTCAAACCAA4585720.9895118502142329No Hit
GAAACTGGTGAACCGG2570340.5546308734679944No Hit
CGTAAGGTCTTGTTCC2384080.5144394799200013No Hit
TGTGCGGCAATCGCCC1905310.4111299476051046No Hit
GGTCGAGGTGAGCATA1796530.38765727612356965No Hit
CACGGTAAGAGAGGCG1789200.38607560042987915No Hit
GTAGCCTTCAGGTTGG1661920.3586109780161104No Hit
GAAGGAATCGCCTGTG1262260.27237189101197146No Hit
ACGTAATCATGGAGGA1241110.26780812008133653No Hit
AATACCCGTCACGATT1229600.2653244792580927No Hit
CTACTGATCAAGCGCA1222860.2638701144319707No Hit
AACCTTTAGGCTAGCA970920.20950621616889017No Hit
AAGCCATAGTTCGCGT956660.20642917723409804No Hit
CTGCTAATCGCGAAAT956430.20637954757385946No Hit
CCGAAGTCAGTACCGG836900.18058722892899948No Hit
GTAATCCGTTGCTCAG792720.17105401854056215No Hit
ATCACAAAGCGATGCA678320.14636865710015406No Hit
CGCCTTTGTTTATGGC651290.14053609311646323No Hit
GTAAGTATCAGCTAGG643150.13877963470628032No Hit
TAGGGTTAGTCACTCA632480.13647725003347305No Hit
TTACTAGGTTTCCGGA629750.1358881675445542No Hit
TATGTTGGTAACGTGA627100.13531634754615315No Hit
GGCATGTCATGCCTGC616870.1331089065711936No Hit
AACATAGTCACCTGGT587840.12684478032455856No Hit
AGTAACTCAGCCAAAC580870.12534078583819802No Hit
GTAGGCGGTTACAACC567350.12242342494069526No Hit
GTTGAATCAAATACCG564810.12187534086675614No Hit
GCACGTAAGATGAACC551580.11902055649738025No Hit
GTGCGAGGTTGCTCAG536360.11573636767637492No Hit
TCGCGCTCACTTGCTG535280.11550332405438504No Hit
AAACTAGTCAGTTTAC531830.1147588791508063No Hit
GGACTTACAAGCTCAA525020.1132894096454813No Hit
GCTCGATTCTTGCAGC515100.11114886082127808No Hit
GTCGGTTTCGCTATAT514790.11108196867052172No Hit
GTTACCGGTTGCGAGG513710.11084892504853187No Hit
CCCGTTACATCATCAC512940.11068277357729836No Hit
TGAACCACATAGCTTC511290.11032673471036938No Hit
GTGCTGGCAACCAAAT510980.11025984255961303No Hit
AGTCATTTCAATCGGG501950.10831133894241998No Hit
GAGCTTGAGATTCGTT498490.10756473622752652No Hit
AGGGCTTCAGTAGGAG498350.10753452686912043No Hit
TCCTTGTTCAGGACCA495310.10687855222944526No Hit
CTGTGGCGTCCTCCAT491930.10614921200506955No Hit
ACCGCTAGTACGTTTA488100.10532277027153142No Hit
GGCGCTTGTATGGTCT483890.1044143317080339No Hit
TTGATGAAGGAACCTG482820.10418344589735874No Hit
ATGCGATAGCCATCAC479690.10350805095585107No Hit
TTCGCGCCAGGTTGTA479230.10340879163537392No Hit
ACTTAGTTCGCAATTT478520.10325558703202871No Hit
ATCACTAGTAATCCAC468340.10105893511364275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)