FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60900558
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCCTAGAACCTGG13209182.168975200522793No Hit
CCGCCATCACAACATG7894191.2962426386963484No Hit
GTCAAGCCACGATTCT6578731.0802413337493557No Hit
CGGTAATAGGACGAAA4547580.746722222151068No Hit
TTCTATCGTTAACTGC2354420.3866007270409575No Hit
TAGGATATCCACCTGG2322460.3813528276703146No Hit
CCTTGTTTCACACAAA2181100.3581412176880218No Hit
CCCTGGATCCCTGGTG1980560.3252121269562095No Hit
GCCTCATAGATTCCTG1846430.30318769821452213No Hit
TGTCAATTCCCTGGTG1534290.25193365223353126No Hit
AGGGTCCAGGTAAGTC1463930.24038039191693447No Hit
TGGTCCTAGGCACTAG1454950.2389058569873859No Hit
TCGATTAGTGCTTCCT1337650.21964494972279233No Hit
AGTGATTCATAAGCCA1215530.19959258829779525No Hit
CTCGATTCAGTTGGGT1208840.19849407619549234No Hit
CATAACCGTCACCAGC1127190.18508697407994193No Hit
GATTGGCCACTTCAAC1103790.18124464475350127No Hit
CGGGTCACAGAATCTG1075690.17663056551961315No Hit
TGGACCAAGTCAACAA1045460.17166673579575412No Hit
ACAGGTTAGCCTAATT1043120.17128250286311006No Hit
GTTGAGGTCGACATTT1010400.16590980989041182No Hit
CGTCCAAGTAATCCCG920380.15112833613117305No Hit
AGTAATGTCTTTGGTG882050.14483446933277688No Hit
GGGTCACAGATTCGTT875870.14381970030553742No Hit
TAGTGTGCAGGTTATG847710.13919576894517124No Hit
AATTGAGTCTTGTCGA814950.13381650788815433No Hit
TTAGGCCTCCGTCCCT800870.13150454220797123No Hit
TCATTGAGTTCCTGGA780640.1281827335637877No Hit
ATGTTGCGTTTATGGC779010.1279150841278006No Hit
GCCTTAATCGCTTTAG776710.12753741927947523No Hit
CCTCAAGGTCAATTCA772810.1268970310584018No Hit
TTGGCTTCAGCCAGTG772300.12681328798333835No Hit
TTCCGCACAAGGTGTC771010.1266014672640602No Hit
GCGCAAATCTAAGTCT770980.12659654120082117No Hit
CGTGTGTTCCAAATTC758730.1245850653782187No Hit
ACAACCTGTCCGGTTA730680.11997919624972896No Hit
CGGTCATTCATCACAT728490.11961959363328001No Hit
TAGCTAAAGGATTATG726030.11921565644767984No Hit
AAGTGAACATAGTCAG722300.11860318258496089No Hit
CGAGGAACATACTTGC701110.1151237399171285No Hit
TGACGGATCAAACCAA691950.11361964860814576No Hit
TGCAGGTCACTTCAAC690920.11345052043693919No Hit
TGCTGGAAGGTAAGTC685570.1125720391593128No Hit
CCAACAACATCCTGGC677020.11116811113619025No Hit
GTGGCTTTCAGCCTGT676540.11108929412436581No Hit
GATTGTTTCTAGTTGT669820.10998585595882387No Hit
TACGCGTTCACCTATG656720.107834808344449No Hit
GCATCTATCGGGATGC654400.10745385945396428No Hit
TACCGAACACCTTCAG647350.10629623459279305No Hit
CTAGTTGTCAACCGGA643660.1056903288143928No Hit
AATGGCCCAATCGTGA634390.10416817527353361No Hit
GCCAATACATCAGGAC613230.10069365866894027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)