FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113776817
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTACCGTTTAACCA14364041.2624751138889743No Hit
ATTTACGGTTCAAGCT12496421.098327438708362No Hit
TTGGCTTCAGGTTGTA12081471.0618569158952655No Hit
CCAAACCTCCTAATGT11048850.9710985323134852No Hit
CTGATTAGTTATGGGA10442450.917801207252968No Hit
TAACCAAAGTGCTCCG9913950.8713506196961022No Hit
CCTCAAGGTGGTTCTG9842410.8650628712877423No Hit
AACTGAGGTAATTGGG9613360.8449313536341941No Hit
GTGAACAGTTTAATCG8822000.7753776412992816No Hit
TAGTCTCCAATCTGGA8630890.7585807221167032No Hit
TGGTTAAAGGCGATAT8581840.7542696505563168No Hit
GTAACGGTCAATATCC8255910.7256232172499605No Hit
TCCTTTGGTGCAATAG7663930.6735932857042397No Hit
TCTGGCTAGAAGCAAG7636070.6711446322144871No Hit
TCTGGTCAGCCGCAAA7473090.6568200971908013No Hit
GGACAACGTCGGTTCA7272110.6391556902141146No Hit
GTAATCCGTATTACTG6760070.5941517945611011No Hit
GATTCAGCAAGTGCCG6551430.5758141397117833No Hit
GCAGCACAGAGCAATC6527550.5737152938634239No Hit
CGTTTCGCAGGTTTGA5825550.512015554100094No Hit
ATTGCGGAGGAGTATC5395140.4741862307503294No Hit
CATTGCGGTAACGAGC5159150.45344474700852283No Hit
ATCCTAAGTCTATCTT5121850.45016639901255107No Hit
CAGAGGGAGATTAGGC4637040.4075557852879642No Hit
GGGTTGCAGTCCTTAG4582930.4027999834096256No Hit
TCCATGATCGCCCGTA3776770.3319454788403863No Hit
CCCTCAACAACGGTAC3174220.2789865355435282No Hit
ACAGGCGGTATAGCTC3035370.26678281920999775No Hit
CAGTAGCCAACGGTAC2784490.244732633010818No Hit
TTGCTGATCATGCAAA2741440.2409489096535369No Hit
TAATCACTCGTTTCTC2732860.2401948017230962No Hit
CGCTAATGTCGGTTTG2461880.21637799904351337No Hit
CCTAAGTGTGATCCTG2283830.20072894111636116No Hit
ACGGATAGTTTGGTTA2143840.18842502862424074No Hit
CGCATTTCATTGAGGC2088920.1835980347384828No Hit
AAGCTCGAGCCTGGTT2085570.1833035986584156No Hit
GTCATAGCACGCAATA2060170.18107115793193618No Hit
TACCTTGAGGCTTAAA2010130.17667307391803727No Hit
TCACCGGTCATAACGA1997150.17553224397198597No Hit
CGATATGCACAGCAAC1889570.16607689069030646No Hit
GGTGAAGCAATTGCCT1649460.14497329451570087No Hit
TACGGATAGTTAGGAC1609350.14144797177794138No Hit
TTGTCCAAGGATTATG1594170.14011378082408474No Hit
TCGGTATGTCATGGTT1587420.13952051409559119No Hit
GCTCGATTCCGCAATC1582060.13904941636748372No Hit
CGTCAAGAGCGATGCA1575360.13846054420734938No Hit
GGTGTTTGTACGCACC1571440.1381160100479872No Hit
GAAGGCCTCGCAACTC1527250.13423209053211604No Hit
TCCATGATCATTCAGT1469780.12918097366003833No Hit
GGCTTAACAATAGCCA1444560.12696435337965203No Hit
TTGTTGTAGGTCCGTT1396390.12273062622238763No Hit
GTAATAGTCTAATCAC1356110.11919036195220684No Hit
TGACTATTCCAAACTT1304460.11465077283714133No Hit
ACAAAGGAGGCAATAC1304050.1146147373765958No Hit
CTAAGTGCATCAGGTA1303730.11458661213909684No Hit
CTAGGACCAACCAAAT1299410.11420692143286097No Hit
CGCGATTTCGCTAGCT1263400.11104195330055684No Hit
TCAAGCGAGCAAATCA1241160.10908724929437955No Hit
ATTGCCGGTTAGGTTC1234520.10850365061627625No Hit
GATCAGTAGTGTGGTG1229510.10806331486668326No Hit
TCAGGAAGTCCCTCTG1218890.10712990854718672No Hit
CCTTATGAGCTAATCT1182480.1039297838680089No Hit
AGTAACTCAGGAGGAC1182260.10391044776722835No Hit
ATTATGGAGTATAGTG1177920.10352899923364879No Hit
CCTCATGCAGGATCAC1172340.10303856540476079No Hit
CATTACGTCAGTGAAC1167440.10260789770555807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)