FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70131578
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAGTTAGGTTGCGA3400610.4848899877883826No Hit
TCCACAATCTCAATCG3204910.45698529697991397No Hit
AACCCGGCATAAGCAT3026310.43151888012558337No Hit
GCAACAAGTGCGCAAG3009640.4291419194930991No Hit
TTAGCCGGTGCAACAA2934040.4183621820116467No Hit
CAGCTAACATGAGCCG2793340.39829989281005485No Hit
AAGCGGGAGACACGCA2778870.3962366282418456No Hit
ATCGCCTAGCTTAGGG2763890.3941006432223727No Hit
TTGGCTATCTTGTTGG2754080.39270184395394614No Hit
ATTACGAAGGCTATAA2748010.3918363279947872No Hit
CGATTTAGTTTCTCAT2716970.38741036170610615No Hit
TACGCGTTCTGTTGGC2705170.38572781008863083No Hit
ATAAGCATCCGCCTCT2651690.37810214394434416No Hit
ATGGGCGGTTTACCGG2646230.3773236073484615No Hit
GGCAATTAGGAGCTTG2550560.36368210622609976No Hit
TAATGCAAGTCACTCA2391700.3410303986030373No Hit
ACACAATCAATCGTGA2277520.3247495728671612No Hit
CAAAGTCAGTCAATCT2231110.3181320118021585No Hit
ACTCACTCAAATGAAG2168300.3091759891671053No Hit
TCTTCATGTTCCTGGA2101090.29959257440350195No Hit
TAAAGCATCATGAGGT2096980.2990065331197881No Hit
GGGAAGCCAGTATGTG2034850.2901474710864199No Hit
CTCTCCTCAGTTCCTG2013850.2871530995637942No Hit
GTAGGTGTCGCGAAAT1996640.28469914080644243No Hit
TTCCTGTTCAAAGGGA1939380.27653448778808315No Hit
AGTCTAGCACTTCAAC1819820.2594865325859344No Hit
ACGGATAGTAAAGGTT1806020.257518802728209No Hit
TTTAAGGAGCCTTAAT1771380.25257951560707786No Hit
TGCGGTTTCTATATGC1754110.2501170015025186No Hit
CAGGAAGCAAGGTCAC1744860.24879805214136205No Hit
GTCACACTCGCGTTAC1657890.2363970763640881No Hit
CATGAGGTCATAGCTT1562240.22275842702412885No Hit
TGCTACTCAAGCCTGG1532750.21855347387164167No Hit
GGTTAACAGCTCATTG1530950.2182968134554166No Hit
GAAGGCCTCCGTCCCT1453590.20726611912254422No Hit
CGATGAAGTGCAAGGT1398580.1994222916244662No Hit
GATCCTGGTTGCGAGG1383810.19731625032021952No Hit
GCGGGTTAGCAACCCT1354080.19307707577890235No Hit
TTGGCTTCAATTTGGG1303560.18587347343018576No Hit
GTCAAGCCACGCGCAA1237430.17644405491631746No Hit
ACGTTATTCGCAACCT1204510.1717500210818014No Hit
CCCGCTAAGTCACTAT1184190.16885261016086076No Hit
GAGCGGTTCATGGATA1148090.16370514292434715No Hit
TCCTTTGGTGAACCGG1038400.14806454233783245No Hit
CATTAGCGTTGTGGTT1026640.1463876942851621No Hit
TTAGTCAGTAACGTGA1007930.14371985184762276No Hit
GCCACCTCATAGGTGC989440.14108337901651094No Hit
AACTGAGGTATTGTCA967890.13801058347781653No Hit
CATAACCGTATTGCGT931640.13284172787328413No Hit
CGTTATGTCTGGAAAC908760.12957928880482342No Hit
AACTTGTTCCCGCAAT891510.12711962648266661No Hit
TGTCTTGAGTTTGACT891310.12709110865864162No Hit
TAACCTAGTATCCGTG861660.12286334124693445No Hit
CACAGGATCAGAAAGG849950.12119362265027031No Hit
TTAGCGGAGTTATGGA832580.11871684963369854No Hit
GAAGCTAGTAGGCGCA811540.11571677454626787No Hit
TTTAACGGTACGGTTT801520.11428803156261506No Hit
TACTACGTCCTTCGGG782000.11150469193777444No Hit
ATTATGGAGCTTAGGG781720.11146476698413944No Hit
AACCTTAGTCTATGAC774460.11042956997203172No Hit
CCAGCTAGTTGCTCCT770570.10987489829474534No Hit
GTGTTGCTCAGTCTAT757290.10798131477948493No Hit
AAGGTTATCGTTAACT752150.10724840670204228No Hit
GCGTAATAGATATTGG736180.10497125845364552No Hit
TGCGGTTTCAGGATTA719300.10256435410593498No Hit
CCATCATCAACCGCCT713820.10178296572764982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)