FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98512495
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCACAAGAGCCGGT4646800.471696509158559No Hit
TAGGCTTGTGCGGTTC4622550.4692348924874961No Hit
TTCGCGCCACAAGGCT4507920.4575988051058904No Hit
ATGTTGCGTGAAACAT4492760.45605991402410423No Hit
ATCACAGCAAGTGGCT4346770.44124047411447653No Hit
GGCTGATCACATAACG4045910.4107001857987659No Hit
CATAACTTCTAGCCTA3939010.39984877045292583No Hit
TGCAAGCCAAACTAAC3897920.39567772595750417No Hit
ACGCTAACAGTTGGCG3764580.38214238711546183No Hit
CCAAGGTCATCCTCAG3732630.37889914370760786No Hit
TACTGAAAGAAACCGT3680310.373588142296061No Hit
CGGGCTACACCAACAA3669500.37249081956557895No Hit
GATTCTTAGAACCTTT3666380.3721741084722298No Hit
ACATGAATCGCGCAAA3558640.3612374247551034No Hit
GCTTATGTCCTTGCAA3387080.34382237501953433No Hit
ACCTGGAAGCCTTGCG3329170.3379439328990703No Hit
AAATGGACAAAGCTCA3242120.32910749037469816No Hit
CATGATTTCCCAAAGG3049870.3095921994463748No Hit
CGGTGTGCATGAATCG3008600.3054028831571061No Hit
GAGTAACTCCTTCATC2926990.2971186548467786No Hit
CAAGCCTTCAGGAGGG2843750.2886689652921693No Hit
ACCTTAGTCCACTAAT2788960.28310723426505435No Hit
TACTACGTCTAAGTCT2761080.2802771364180757No Hit
AATATCGAGCTTAGGG2743360.278478379823798No Hit
CGTTATAGTTGCTCAG2645740.26856897696073984No Hit
TGGATCACACCTGGTC2640560.26804315533780765No Hit
AGAATCTCACCTTGCA2598630.26378684247109974No Hit
GGCATTACACCGTTCA2153060.21855704700200718No Hit
GAGAAGGGTATCGCTG2150310.21827789459601038No Hit
AAGTAGGAGGTATTTC2079150.21105444542847077No Hit
TCCTTAGAGGAAGTAG2040660.2071473268441734No Hit
ATTGTCCCATTAGCAG2022830.2053374041536558No Hit
TAAAGGCTCGAGGCGT1817700.18451466486560916No Hit
ATTAGTCTCAGCTATT1768930.1795640238327128No Hit
ATCCTAAGTCGCATTG1748520.17749220543038727No Hit
GGCGATTCATAATCGG1715770.17416775404987966No Hit
CACAAGGTCGCTAATT1687930.17134171660153366No Hit
TGCTGGTTCCCACCTC1683130.17085446876561192No Hit
GTAACGGTCATGATGA1618550.16429895517314835No Hit
CATTGCGGTGAACCGG1583160.16070651748288378No Hit
TAAAGCATCTACTACG1551760.15751910455622914No Hit
AAACCGGTCGTGATGG1550400.15738105100271796No Hit
CCTCATGCACGATTCT1532730.1555873699067311No Hit
TTGTTGTAGTGGCGGT1519060.15419972867401235No Hit
CTGTCCACAATCTCTA1483490.15058901918990072No Hit
AAAGTCATCCTAACCA1439180.1460911126045483No Hit
AGTAAGTGTAAATAGC1405270.14264890966369292No Hit
ACTTGCATCCCTGTGG1371130.13918335943069962No Hit
TGCGCCATCCGGATTC1367380.1388026970588858No Hit
TTCGCCTGTATCCGTG1307300.13270397831259884No Hit
CAGTAAGGTCGGTTCA1296570.13161477637938213No Hit
CCAGGCTGTGCGGTTC1294940.13144931513510036No Hit
GTCAGGATCATTAACC1231380.12499734170777017No Hit
GCTTAACGTTTGCTCC1222320.12407766141746791No Hit
ATTAGCTTCGCAACCT1190940.12089227869012961No Hit
GGTTGCTTCGATTATC1176720.11944880697621149No Hit
TTCTAAGGTGAGCATA1152790.11701967349421005No Hit
GCTGTTGGTAGTTACC1144190.11614668778818361No Hit
CGAGCGAGTCACTCAG1123470.11404340129645484No Hit
CCATCATCACAGCAAC1121360.1138292152685809No Hit
AGCTACCTCTATCGGC1111370.11281513071006882No Hit
AACCAGGTCTAACTGT1096690.11132496441187485No Hit
CGTTATAGTCCGTTAG1086250.1102652003687451No Hit
CTGCTAATCATTTGGT1075690.1091932551297173No Hit
CGTAGTTGTCATTTCT1060230.10762391105818606No Hit
TCACGCCCAGAATCTG1049360.10652049772975498No Hit
AACTAACCATCCCAAT1034630.1050252559332702No Hit
TCAAAGATCTCAAATC1011570.10268443612152955No Hit
GAAGGAATCAGCTAGG999600.10146936183069975No Hit
GATAAGCTCAAACCAA999010.10140947095086769No Hit
GCTTTGTCATTCAGGA989330.10042685448175888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)