FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78720957
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGAGGTAGAGGGA9613051.2211551239144616No Hit
CTGGCTTAGCATTATC7769180.9869265181824454No Hit
AGAGCCGGTCCATTAA6516500.8277973551566453No Hit
GGTGTTTGTCCGTTAG3564620.45281715769791775No Hit
GTCATCATCGGTCCAT3117810.39605844730774803No Hit
TAAACCGCAAAGGAAC2404090.3053938991112621No Hit
GCAACAAGTAGACTAG2172070.2759201720578676No Hit
GAATCAGGTTACTTAG1825550.23190139825154818No Hit
CGGTTTATCGCTAATT1810650.23000863670902782No Hit
TAGGTGAGTGACCTTG1810600.23000228516022742No Hit
TAGGTGAGTCACAGGG1774310.2253923310408942No Hit
GTTCAAGCATAATGGT1773190.22525005634776518No Hit
TTGCGACTCTTGTCGA1757200.223218831041396No Hit
TAGCGAGTCTTTAGGT1702170.21622831643167145No Hit
TGACGAAGTAATCGCT1653850.21009017967096108No Hit
CAAGGTTAGGTGCACA1557470.19784693420330243No Hit
TACCGAACAGCTACCC1522410.1933932281844592No Hit
TTGTGCGGTGGATTGA1488500.18908560778802525No Hit
TTCGTTCTCCTCATGA1453450.1846331720789421No Hit
ACTTCGTCATTAGTGG1414920.1797386685733508No Hit
CCAATACGTGCACCAC1397840.1775689795031328No Hit
TTACTTGCATCATCAC1379400.17522652830554386No Hit
TTGCGACTCTAGTTAC1364930.17338839008270696No Hit
TAATTCGGTCTAACCG1306030.1659062655958311No Hit
TGGTGAGTCATAGCTT1290160.1638902840065829No Hit
TTTAGCTAGGTTCCCG1271650.16153894064067337No Hit
GGTTAAGGTCCAAGTT1257580.15975161480823968No Hit
CTATTGCCAGCTCGAG1256950.1596715852933546No Hit
CCCGATTAGGAGCAGG1243750.15799477641004797No Hit
TTATGTGGTCTAATCA1237830.15724275303208013No Hit
TGCAGGTCATGACTTC1167050.14825150055022834No Hit
AGCCTAGAGCAAACAC1141060.14494996548377836No Hit
TATAGTGAGAGCCGGT1130630.14362503240401409No Hit
AGAAAGCCAATCGTGA1122540.14259735180810876No Hit
TAGATTGAGTTGTCAT1119950.14226834158024781No Hit
ACTAACCGTTCACCTC1080110.13720742749608594No Hit
GCGCAAATCTTTAGGT1076310.13672470978725526No Hit
GTTACAAAGTTACCCA1071630.13613020481953744No Hit
CTGTGCAGTTTAACCA1067560.13561318874718456No Hit
TCAATCTAGCCTAGTC1060540.13472143129560785No Hit
TGTTGCGGTGGGTAAC1058940.1345181817339949No Hit
GGTCCTTAGCGCTCCA1053560.13383475508307147No Hit
CCCTCACTCTAGTTGT1029240.130745361746555No Hit
TACCTAGTCAGCCATC1029080.13072503679039368No Hit
GCGCTTAGTATCCGTG999330.12694586525415336No Hit
GACAAACTCAGCCATC946300.12020941259644492No Hit
ATTGTCCCAAGGCTGT932290.11842970862257175No Hit
GGCTATGAGATTCCTG925550.1175735198442773No Hit
TATTCAGGTGTCCGGT921750.11709080213544659No Hit
ACGTAGTAGTCTTGCA913080.11598944357345654No Hit
GGTTGTTGTAATCACC911110.11573919255072065No Hit
AGGTGTTAGATAACTG911080.11573538162144041No Hit
TAACCGTGTAACAGCA907060.11522471709788792No Hit
ATAATGGTCTCAAGAA898530.11414114287253901No Hit
GAGCTTTGTTTGTTGA880280.11182282756039158No Hit
CCCACCTTCGCGAAGC873710.1109882340480185No Hit
CCTTAGGGTAACCTTA868340.1103060777068551No Hit
TAGCAAATCGACAAAC842050.10696643334760272No Hit
ATTTGTGGTGCTTCGA835880.10618265222563288No Hit
CTGCAATGTTACAACC811310.10306150114511438No Hit
GAAGGATCAGGTATTG810410.1029471732667071No Hit
GTTGCGCGTCAACCGC808170.10266262388044901No Hit
AAGTGAACAGCCAATA804300.10217101400329776No Hit
CTATCCGCAGTGAACC802610.10195633165384409No Hit
GTTCAAGCAACCTGCC792220.10063647981312016No Hit
ATGCAAGGTCACGATT789910.1003430382585415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)