FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115186486
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTACCGTTTAACCA14634451.2705006036906101No Hit
ATTTACGGTTCAAGCT12704551.1029549074012033No Hit
TTGGCTTCAGGTTGTA12326681.0701498437933075No Hit
CCAAACCTCCTAATGT11199550.9722972189636898No Hit
CTGATTAGTTATGGGA10620820.9220543458544259No Hit
TAACCAAAGTGCTCCG10032550.8709832505872259No Hit
CCTCAAGGTGGTTCTG9984920.8668482168993331No Hit
AACTGAGGTAATTGGG9773830.8485222823795493No Hit
GTGAACAGTTTAATCG8924930.7748244008416056No Hit
TAGTCTCCAATCTGGA8765580.7609903127003979No Hit
TGGTTAAAGGCGATAT8708200.7560088255492055No Hit
GTAACGGTCAATATCC8335020.7236109277610917No Hit
TCCTTTGGTGCAATAG7776690.6751390957442699No Hit
TCTGGCTAGAAGCAAG7775650.6750488073748512No Hit
TCTGGTCAGCCGCAAA7533370.6540150899299072No Hit
GGACAACGTCGGTTCA7375560.6403146980280309No Hit
GTAATCCGTATTACTG6811150.5913150263130694No Hit
GATTCAGCAAGTGCCG6667200.5788179005651757No Hit
GCAGCACAGAGCAATC6586760.5718344424536052No Hit
CGTTTCGCAGGTTTGA5881620.5106171916729885No Hit
ATTGCGGAGGAGTATC5455410.4736154552019236No Hit
CATTGCGGTAACGAGC5258310.45650407288229977No Hit
ATCCTAAGTCTATCTT5221370.4532970994531424No Hit
CAGAGGGAGATTAGGC4774700.414519112945246No Hit
GGGTTGCAGTCCTTAG4596940.39908674703384905No Hit
TCCATGATCGCCCGTA3806140.3304328599797723No Hit
CCCTCAACAACGGTAC3212470.2788929597175141No Hit
ACAGGCGGTATAGCTC3069910.2665165078479779No Hit
CAGTAGCCAACGGTAC2829920.2456815984472345No Hit
TTGCTGATCATGCAAA2769450.24043185065998107No Hit
TAATCACTCGTTTCTC2748630.23862434695681228No Hit
CGCTAATGTCGGTTTG2494600.21657054456891756No Hit
CCTAAGTGTGATCCTG2292180.19899730251342157No Hit
ACGGATAGTTTGGTTA2174460.18877735362115308No Hit
AAGCTCGAGCCTGGTT2131740.18506858521580388No Hit
GTCATAGCACGCAATA2101870.1824753990672135No Hit
CGCATTTCATTGAGGC2099070.18223231499570183No Hit
TACCTTGAGGCTTAAA2054060.17832473854615202No Hit
TCACCGGTCATAACGA2018980.1752792423930703No Hit
CGATATGCACAGCAAC1920510.16673049649244442No Hit
GGTGAAGCAATTGCCT1679550.1458113758240702No Hit
TACGGATAGTTAGGAC1630950.14159213086854652No Hit
TTGTCCAAGGATTATG1618360.14049912070414233No Hit
GCTCGATTCCGCAATC1609710.13974816455465097No Hit
CGTCAAGAGCGATGCA1606660.13948337654818294No Hit
TCGGTATGTCATGGTT1600660.13896248210922937No Hit
GGTGTTTGTACGCACC1594730.1384476647720636No Hit
GAAGGCCTCGCAACTC1536870.13342450606575496No Hit
TCCATGATCATTCAGT1489580.1293189897294028No Hit
GGCTTAACAATAGCCA1471120.1277163711722224No Hit
TTGTTGTAGGTCCGTT1416400.1229658138889661No Hit
GTAATAGTCTAATCAC1375220.11939074172294831No Hit
TGACTATTCCAAACTT1323460.11489715902957576No Hit
CTAAGTGCATCAGGTA1321330.11471224150374723No Hit
ACAAAGGAGGCAATAC1320100.11460545814376176No Hit
CGCGATTTCGCTAGCT1307680.11352720665512793No Hit
CTAGGACCAACCAAAT1307320.11349595298879073No Hit
GATCAGTAGTGTGGTG1260270.1094112724299967No Hit
TCAAGCGAGCAAATCA1255500.10899716135102863No Hit
ATTGCCGGTTAGGTTC1253770.10884697012113036No Hit
TCAGGAAGTCCCTCTG1229780.10676426052271444No Hit
AGTAACTCAGGAGGAC1212710.10528231584389161No Hit
ATTATGGAGTATAGTG1199560.1041406888651851No Hit
CCTTATGAGCTAATCT1193690.10363108047240889No Hit
CCTCATGCAGGATCAC1189350.10325430016156582No Hit
CATTACGTCAGTGAAC1175550.10205624295197269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)