FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70346245
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAGTTAGGTTGCGA3404030.48389647521342466No Hit
TCCACAATCTCAATCG3246380.46148589736381807No Hit
AACCCGGCATAAGCAT3029680.4306811259079998No Hit
GCAACAAGTGCGCAAG3014880.42857724673150643No Hit
TTAGCCGGTGCAACAA2956830.4203252071237064No Hit
AAGCGGGAGACACGCA2820250.40090981402063464No Hit
CAGCTAACATGAGCCG2801380.39822736807060566No Hit
ATCGCCTAGCTTAGGG2799470.39795585393363925No Hit
ATTACGAAGGCTATAA2765330.3931027164278633No Hit
TTGGCTATCTTGTTGG2763200.39279992841124645No Hit
TACGCGTTCTGTTGGC2740650.38959435574706225No Hit
CGATTTAGTTTCTCAT2714800.38591967488811946No Hit
ATAAGCATCCGCCTCT2667060.37913324300394424No Hit
ATGGGCGGTTTACCGG2639860.37526665424714567No Hit
GGCAATTAGGAGCTTG2559090.3637848757954316No Hit
TAATGCAAGTCACTCA2390970.33988594558245433No Hit
ACACAATCAATCGTGA2292740.3259221583184717No Hit
CAAAGTCAGTCAATCT2259560.32120548865117104No Hit
ACTCACTCAAATGAAG2191780.31157029063882513No Hit
TCTTCATGTTCCTGGA2116060.3008063898790902No Hit
TAAAGCATCATGAGGT2091300.2972866568784162No Hit
GGGAAGCCAGTATGTG2044860.2906850251921762No Hit
CTCTCCTCAGTTCCTG2019530.2870842644124075No Hit
GTAGGTGTCGCGAAAT2000590.28439186768248964No Hit
TTCCTGTTCAAAGGGA1948830.27703397672469937No Hit
AGTCTAGCACTTCAAC1826590.2596570719588515No Hit
ACGGATAGTAAAGGTT1813320.25777068839992806No Hit
CAGGAAGCAAGGTCAC1776210.2524953535188694No Hit
TTTAAGGAGCCTTAAT1769810.25158556792903447No Hit
TGCGGTTTCTATATGC1754830.24945610103282698No Hit
GTCACACTCGCGTTAC1684900.23951527192389585No Hit
CATGAGGTCATAGCTT1564550.22240703821504618No Hit
TGCTACTCAAGCCTGG1540510.21898965609322857No Hit
GGTTAACAGCTCATTG1529490.2174231190307315No Hit
GAAGGCCTCCGTCCCT1468870.20880574364701343No Hit
CGATGAAGTGCAAGGT1398560.19881089601868585No Hit
GCGGGTTAGCAACCCT1381440.19637721956587734No Hit
GATCCTGGTTGCGAGG1369830.19472681164431732No Hit
TTGGCTTCAATTTGGG1301390.18499779199301966No Hit
GTCAAGCCACGCGCAA1256890.17867193906369844No Hit
ACGTTATTCGCAACCT1203920.17114204176782996No Hit
CCCGCTAAGTCACTAT1201640.17081793065145126No Hit
GAGCGGTTCATGGATA1152400.1638182677696585No Hit
TCCTTTGGTGAACCGG1040230.1478728537678166No Hit
CATTAGCGTTGTGGTT1035410.14718767149547216No Hit
TTAGTCAGTAACGTGA1003570.1426614881860432No Hit
GCCACCTCATAGGTGC996730.14168915483690706No Hit
AACTGAGGTATTGTCA979040.13917445060500386No Hit
CATAACCGTATTGCGT928750.1320255260248788No Hit
CGTTATGTCTGGAAAC906200.12881995336069466No Hit
TGTCTTGAGTTTGACT895630.12731738559748285No Hit
AACTTGTTCCCGCAAT895030.12723209319843581No Hit
TAACCTAGTATCCGTG856250.12171936114002957No Hit
CACAGGATCAGAAAGG852480.12118344056601743No Hit
TTAGCGGAGTTATGGA849640.12077972321052814No Hit
GAAGCTAGTAGGCGCA814920.11584413638567348No Hit
TTTAACGGTACGGTTT803850.1142704916232558No Hit
ATTATGGAGCTTAGGG784910.11157809489333793No Hit
TACTACGTCCTTCGGG784580.11153118407386207No Hit
AACCTTAGTCTATGAC775150.11019067186883963No Hit
CCAGCTAGTTGCTCCT765300.10879045498448424No Hit
GTGTTGCTCAGTCTAT761580.10826164211039267No Hit
AAGGTTATCGTTAACT745350.10595448271617056No Hit
TGCGGTTTCAGGATTA734100.1043552502340388No Hit
GCGTAATAGATATTGG733120.10421593931559531No Hit
CCATCATCAACCGCCT718220.10209784473926078No Hit
AGTTTCTAGACAACGT715920.10177089054291383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)