FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99771877
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCACAAGAGCCGGT4748800.4759657874332664No Hit
TAGGCTTGTGCGGTTC4690970.4701695649165746No Hit
TTCGCGCCACAAGGCT4563310.45737437614810034No Hit
ATGTTGCGTGAAACAT4556280.4566697687766263No Hit
ATCACAGCAAGTGGCT4386350.43963791520129464No Hit
GGCTGATCACATAACG4116470.4125882085991025No Hit
CATAACTTCTAGCCTA3976630.39857223493951105No Hit
TGCAAGCCAAACTAAC3967210.3976280811074648No Hit
ACGCTAACAGTTGGCG3834340.3843107011006719No Hit
CCAAGGTCATCCTCAG3771410.37800331249656655No Hit
CGGGCTACACCAACAA3729530.37380573686109964No Hit
TACTGAAAGAAACCGT3716820.3725318307883493No Hit
GATTCTTAGAACCTTT3711550.37200362583135527No Hit
ACATGAATCGCGCAAA3630310.3638610507447905No Hit
GCTTATGTCCTTGCAA3428160.3435998302407401No Hit
ACCTGGAAGCCTTGCG3353250.33609170247443576No Hit
AAATGGACAAAGCTCA3290960.3298484602028686No Hit
CATGATTTCCCAAAGG3086240.3093296520822195No Hit
CGGTGTGCATGAATCG3048770.30557408476939846No Hit
GAGTAACTCCTTCATC2970790.2977582550642001No Hit
CAAGCCTTCAGGAGGG2903360.2909998375594357No Hit
ACCTTAGTCCACTAAT2845250.2851755510222585No Hit
TACTACGTCTAAGTCT2811300.28177278853839743No Hit
AATATCGAGCTTAGGG2798410.28048084130962075No Hit
CGTTATAGTTGCTCAG2684190.2690327255244482No Hit
TGGATCACACCTGGTC2678080.26842032850599773No Hit
AGAATCTCACCTTGCA2630170.2636183741436477No Hit
GAGAAGGGTATCGCTG2197540.2202564556342866No Hit
GGCATTACACCGTTCA2164030.21689779375404553No Hit
AAGTAGGAGGTATTTC2115480.21203169305915737No Hit
TCCTTAGAGGAAGTAG2067610.20723374784259097No Hit
ATTGTCCCATTAGCAG2054110.20588066114061382No Hit
TAAAGGCTCGAGGCGT1824790.1828962283630286No Hit
ATTAGTCTCAGCTATT1795330.17994349249338068No Hit
ATCCTAAGTCGCATTG1788780.17928699487131028No Hit
CACAAGGTCGCTAATT1735410.17393779210949392No Hit
GGCGATTCATAATCGG1730640.17345970147479536No Hit
TGCTGGTTCCCACCTC1689830.16936937048904072No Hit
GTAACGGTCATGATGA1631460.16351902450426986No Hit
CATTGCGGTGAACCGG1623460.16271719534754267No Hit
TAAAGCATCTACTACG1572770.15763660535322996No Hit
AAACCGGTCGTGATGG1568770.15723569077486635No Hit
CCTCATGCACGATTCT1554170.1557723525638392No Hit
TTGTTGTAGTGGCGGT1543370.1546898832022575No Hit
CTGTCCACAATCTCTA1500250.15036802404749788No Hit
AAAGTCATCCTAACCA1474290.1477660884339181No Hit
AGTAAGTGTAAATAGC1414040.14172731259731636No Hit
ACTTGCATCCCTGTGG1374640.1377783040004349No Hit
TGCGCCATCCGGATTC1365080.1368201181581459No Hit
TTCGCCTGTATCCGTG1337530.13405881899966662No Hit
CCAGGCTGTGCGGTTC1320220.13232386116179815No Hit
CAGTAAGGTCGGTTCA1319880.13228978342263722No Hit
GTCAGGATCATTAACC1249040.12518958623981785No Hit
GCTTAACGTTTGCTCC1228320.1231128487238944No Hit
ATTAGCTTCGCAACCT1196870.1199606578515106No Hit
GGTTGCTTCGATTATC1189450.11921696130864612No Hit
GCTGTTGGTAGTTACC1178830.11815253310309076No Hit
TTCTAAGGTGAGCATA1172240.11749202633523674No Hit
CGAGCGAGTCACTCAG1153650.11562877583229189No Hit
CCATCATCACAGCAAC1135740.11383368080766888No Hit
AGCTACCTCTATCGGC1131490.11340770906815756No Hit
AACCAGGTCTAACTGT1127490.11300679448979396No Hit
CGTTATAGTCCGTTAG1120330.11228915739452312No Hit
CTGCTAATCATTTGGT1102210.110473014354536No Hit
CGTAGTTGTCATTTCT1077840.10803044228585576No Hit
TCACGCCCAGAATCTG1065600.10680364367606314No Hit
AACTAACCATCCCAAT1047490.10498850292252195No Hit
TCAAAGATCTCAAATC1030960.10333172342743435No Hit
GATAAGCTCAAACCAA1023300.10256397200986807No Hit
GCTTTGTCATTCAGGA1017180.10195057270497176No Hit
GAAGGAATCAGCTAGG1010820.10131311852537364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)