FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007834586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79656787
Sequences flagged as poor quality0
Sequence length16
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGGAGGTAGAGGGA9901541.243025280444716No Hit
CTGGCTTAGCATTATC7916420.9938161327044235No Hit
AGAGCCGGTCCATTAA6635750.833042638287683No Hit
GGTGTTTGTCCGTTAG3617800.4541734780239128No Hit
GTCATCATCGGTCCAT3169600.397907086059095No Hit
TAAACCGCAAAGGAAC2434900.3056738906629513No Hit
GCAACAAGTAGACTAG2206110.2769519187360645No Hit
GAATCAGGTTACTTAG1854880.23285900296229622No Hit
TAGGTGAGTGACCTTG1854440.23280376598669492No Hit
CGGTTTATCGCTAATT1848510.23205932220188596No Hit
TAGGTGAGTCACAGGG1820000.22848021726008105No Hit
GTTCAAGCATAATGGT1804620.22654943388565246No Hit
TTGCGACTCTTGTCGA1788440.22451821964649415No Hit
TAGCGAGTCTTTAGGT1745290.21910122988013564No Hit
TGACGAAGTAATCGCT1683760.2113768409966121No Hit
CAAGGTTAGGTGCACA1571690.19730773223378945No Hit
TACCGAACAGCTACCC1552030.1948396437330569No Hit
TTGTGCGGTGGATTGA1517400.1904922426760698No Hit
TTCGTTCTCCTCATGA1492630.18738265202687626No Hit
ACTTCGTCATTAGTGG1435420.18020058981289316No Hit
CCAATACGTGCACCAC1420230.17829365876883785No Hit
TTACTTGCATCATCAC1406870.17661646332785177No Hit
TTGCGACTCTAGTTAC1384700.17383327298902979No Hit
TAATTCGGTCTAACCG1338820.16807356289678116No Hit
TGGTGAGTCATAGCTT1306590.16402745443398314No Hit
TTTAGCTAGGTTCCCG1288420.16174641841880968No Hit
CTATTGCCAGCTCGAG1282350.16098439923267305No Hit
TTATGTGGTCTAATCA1279620.1606416789067829No Hit
CCCGATTAGGAGCAGG1273220.15983823198894528No Hit
GGTTAAGGTCCAAGTT1263520.15862050775409758No Hit
TGCAGGTCATGACTTC1184530.14870421524784824No Hit
AGCCTAGAGCAAACAC1159950.14561847692902802No Hit
TATAGTGAGAGCCGGT1137360.14278256038622295No Hit
AGAAAGCCAATCGTGA1133540.1423030030071386No Hit
TAGATTGAGTTGTCAT1132670.14219378444174505No Hit
ACTAACCGTTCACCTC1100150.13811126979048252No Hit
CTGTGCAGTTTAACCA1094360.13738440140700126No Hit
GTTACAAAGTTACCCA1089970.136833287036797No Hit
GCGCAAATCTTTAGGT1089030.1367152807707396No Hit
TCAATCTAGCCTAGTC1082340.13587542766443744No Hit
TGTTGCGGTGGGTAAC1062030.133325739086112No Hit
GGTCCTTAGCGCTCCA1059050.13295163411499386No Hit
CCCTCACTCTAGTTGT1047600.13151421736354996No Hit
TACCTAGTCAGCCATC1041360.13073085661865824No Hit
GCGCTTAGTATCCGTG1022550.12836947591170103No Hit
GACAAACTCAGCCATC971300.12193562363995425No Hit
TATTCAGGTGTCCGGT940790.11810544153632509No Hit
ATTGTCCCAAGGCTGT938830.1178593859177373No Hit
GGTTGTTGTAATCACC933060.1171350283058743No Hit
GGCTATGAGATTCCTG928610.11657638162081531No Hit
ACGTAGTAGTCTTGCA925540.11619097817741507No Hit
AGGTGTTAGATAACTG925270.1161570827605688No Hit
TAACCGTGTAACAGCA920190.11551934676953515No Hit
ATAATGGTCTCAAGAA914040.11474728449692555No Hit
GAGCTTTGTTTGTTGA892080.11199045726009511No Hit
CCTTAGGGTAACCTTA882950.11084429001636735No Hit
CCCACCTTCGCGAAGC882470.11078403149752951No Hit
TAGCAAATCGACAAAC862840.10831970915422436No Hit
ATTTGTGGTGCTTCGA850220.10673541226311324No Hit
CTGCAATGTTACAACC827130.10383672642985212No Hit
GTTGCGCGTCAACCGC820350.10298557485126786No Hit
GAAGGATCAGGTATTG816570.10251103901541998No Hit
AAGTGAACAGCCAATA812290.10197373388911607No Hit
CTATCCGCAGTGAACC810550.10175529675832895No Hit
GTTCAAGCAACCTGCC806930.10130084709542703No Hit
AGGAATCTCCTGGATC803410.10085895129061634No Hit
ATGCAAGGTCACGATT797600.10012957213551685No Hit
GAAGCCATCTTGCAGC796720.10001909818431418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)