FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007834589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50269980
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAACGGTGCAACAG2788700.5547446010521587No Hit
GTGCTGGCACTGTTAG1857670.36953863916397023No Hit
TGGTCAATCACCCTTG1401160.278726985767649No Hit
TAGGAGGTCGGACGAA1283920.255404915617631No Hit
GGAGTAGAGCAGAAAG1251020.24886025417157515No Hit
GGTGAAGGTAGGTCTT1196360.23798696558065074No Hit
CAAGGCCCAATTCGTG995510.1980327026189388No Hit
GAGGTCCTCACTTACT988680.19667403885977275No Hit
TTGCTATAGTCTGTGT897690.17857377305501215No Hit
TCGAGCGAGAAATGGG887900.17662628869158095No Hit
GTGCTGGAGAAGAGTG838180.16673569394696397No Hit
TTCGTTACAGTAACCT806560.16044565762707683No Hit
CAAGCTATCTGCTACC788980.15694854065985306No Hit
TCCATCGCACACACAT778430.15484987262775915No Hit
AATGTCGTCTTTATCG775750.15431675126984337No Hit
ATCCTCGAGACCCTAT765600.15229765358967717No Hit
TAGGTCAAGCCATGGA758760.15093700057171297No Hit
ACTACGATCACGATTG734500.1461110587272961No Hit
CCACAGGTCTCCCTTT709480.1411339332142165No Hit
AACCTGACAAGATGCG708500.14093898585199358No Hit
AGTGTACCAAGCCAGA706350.14051129521038203No Hit
TTCATTGAGGTGTCGA702640.13977328019625232No Hit
TGACAACGTATCAGCT691690.1375950418122307No Hit
GGAGTAGTCGTTCAGA690240.13730659928649264No Hit
GCTCCTAGTGCGTCCA667640.13281087440257586No Hit
GCATTGATCGGTCTAA665690.13242296893692815No Hit
CGTAAACAGGGATCCA665380.13236130191418416No Hit
ACGTGGCTCCAGGTAT662710.13183016981506657No Hit
TACAGCAGTCTGGATT660880.1314661354549972No Hit
TCAGCTCTCTCTATCA658460.13098473482583442No Hit
ATGTACGTCAGGGTTT654760.13024870907050293No Hit
TGCCTGTGTTTGTAGC645560.1284185909761651No Hit
GAATCTGAGTCTCCAA644970.1283012247070717No Hit
TACTGCCAGCACACCC644350.12817789066158372No Hit
AGCCTTCAGCCATTCA626940.12471459109392921No Hit
GCAGATTTCATTCTCA625860.12449975114372436No Hit
ACAAAGACATCGTACA620980.12352899285020602No Hit
GTACTTTCAATAGCGG617650.12286656967040767No Hit
TCACAAGCAGCTGATT616110.1225602238154859No Hit
ATTGTCTAGTTCGCGC606400.12062865352244023No Hit
TGACAACTCGCTATTT593390.11804062782599078No Hit
TAGCATGGTCTGTGTA587670.11690277179342422No Hit
GATGGCCCAGCTATAC580870.1155500758106528No Hit
GGCGAAAAGAGAGTAG580110.11539889214199012No Hit
ACAAACCTCGAACACT571050.113596623670827No Hit
CACAGATCAGCAAACG571010.11358866663563423No Hit
GAAAGTACACCCTTAC566280.11264774722408882No Hit
GCTCGAGAGATATGTG565450.11248263874383878No Hit
AACATCGCATCGCCTT561060.11160935413143191No Hit
TCTAGTTTCGAGGTAG559970.11139252492242885No Hit
TGATTTCTCGGTCAGC558250.1110503724091396No Hit
TCAATTCTCGATAGGG533840.10619459168274982No Hit
TAGCACATCCGGCTGA533050.10603744023769256No Hit
TTTGGCCTCACCCTTG531300.10568931994800873No Hit
TGGCGCAGTTACCACA525330.10450173244548734No Hit
GAAGTGGCAGTCAGAG518160.10307543388718278No Hit
CAGCTGGCACCGTTGG515910.10262785065758928No Hit
ACCGAATAGTTATGAG513850.10221806334516147No Hit
AGACAAAGTGCCCGAT513230.10209472929967349No Hit
GAAGTCTGTCAACTAC508390.10113192804134795No Hit
GCACGGTAGTACGCGA505700.10059681742463394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)