FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007834592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90638731
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCATTGCAGGTAGGT5149330.5681158532548298No Hit
GATCGTAAGAGGCGGA4159960.45896052979823826No Hit
AACATCGCAACGCACC3952470.4360685499888563No Hit
CTACTTACAGCAATGG3793100.4184855588942436No Hit
TACCTATTCCTAAAGC3501830.38635028992186576No Hit
TCAGTCCAGTCTGGGA3257600.35940485530407523No Hit
TTACCGCTCAGTGGTT3257160.3593563109351123No Hit
ATATTCCAGCTAACAA3063100.3379460376602139No Hit
TCGATTTTCTCAGATG2788500.30764993830286524No Hit
ACAGACTAGTAGGAAG2586820.2853989648200172No Hit
TACCTATTCACACGTA2466180.2720889814752592No Hit
AAGATAGTCCACGCTT2362110.2606071349344024No Hit
ACCCAAAGTGGCATAG2273920.25087729880066395No Hit
ACGGATTTCCTCCATG2271490.2506092014902548No Hit
GCGGGTTAGGAAACTT2185200.24108898876794732No Hit
TTGCCCAAGATGCGAC2176230.24009934560977028No Hit
CCCGTTAAGCGAATAT2165930.23896296606359152No Hit
ATCCTCGTCGGTGATT2094310.23106126673375424No Hit
CGGACTGTCAGGCGCT2092720.23088584503681986No Hit
CGATGATTCAGAATGA2019970.22285947494123676No Hit
CAATCCCAGGGTCCCT2019220.22277672885777713No Hit
AATGGAACACCTGAAT2002420.22092321658828168No Hit
CAGTGCGGTCGTAGTT1995090.22011451153260297No Hit
GTCACAAAGAAATCTG1992800.21986186015777293No Hit
TGCATTTGTACGCAAG1969660.2173088676627655No Hit
CATGCCTGTGCTTCCT1934150.21339111643123068No Hit
ACTATTCCAAGGAGGG1896520.20923946960378342No Hit
GCTTGCTTCACTACCC1896200.20920416460817395No Hit
CTAGGGCAGCTGGAGT1810950.1997986931215972No Hit
GCATTCCGTGGACCAA1786880.19714309548309983No Hit
TCACAGACATTAAGGA1753950.19350999077866615No Hit
AGCCTTCAGCGTTAGG1735690.19149539946670258No Hit
CTCAGAATCCGATTGA1675360.1848393045132108No Hit
TTACCCGGTTTGCATG1668440.18407583398315672No Hit
AGTGCGCTCCACTAGA1622090.17896212602535222No Hit
CTGCTCAAGCGTATCT1615900.17827919501653217No Hit
CAACCAATCGCCTTAC1606360.17722666483492583No Hit
GTTCAAGCAAGCGGTA1522350.16795800020633564No Hit
TTTGCGCTCACTACCC1521450.1678587049061841No Hit
ACGGATTCAGGTAGGT1501500.16565765908615823No Hit
CCCACATAGGCTAAAT1433870.15819616892032612No Hit
ACAAACCTCTATTTCG1398660.1543115161221752No Hit
AATGTCGCACTTGCGG1376230.15183685658617618No Hit
CCACGTTTCTGGACAT1374970.15169784316596402No Hit
TACTGCCTCGCAGATT1351800.14914154082761816No Hit
ATAGGCTCAGAACAGC1350430.14899039131516525No Hit
GAAATGAGTAGGTGAC1311210.14466332279078356No Hit
CTTGAAGTCATCGCTC1277830.1409805704362741No Hit
CACCTTGGTCGAGAAC1220930.13470290090447096No Hit
AATGTCGTCGCCCTTA1215780.13413471113138156No Hit
GGTGTCGCACGAACGA1179860.1301717253742222No Hit
ACTGCAATCTTACGGA1172680.12937956953523544No Hit
GAACGTTGTCCGGTAC1146910.12653641410756292No Hit
CTAACTTAGACTAATG1143250.12613261322027997No Hit
GGGAACAAGTCTCTAG1139590.12572881233299701No Hit
AAAGGATGTGACCAGA1128900.12454940482341925No Hit
CAGTGCGGTATATGGA1084040.11960008575142123No Hit
CCTATTAAGTTTACGC1073780.11846811932969362No Hit
TGGCAATTCTTCCGTG1066490.11766382739846612No Hit
ATGTCTTAGGCCTCTG1058120.11674038110705677No Hit
TCACTCGGTTTGTACG1015250.11201061497650491No Hit
CGCTGGAGTAACGGAC994550.10972682307301941No Hit
CTACTTAGTCACCCGA982730.10842274479769581No Hit
AGGCGTCTCACTAGCA969820.10699840888107755No Hit
CAGGGCTTCGCAAGCC967740.10676892640961622No Hit
CTAGGGCCAATGGCAG965820.10655709643595959No Hit
GATCGTAAGTGGACGT953040.10514710317380768No Hit
GCTCACTCACCTATTT950560.10487348945783453No Hit
TTAACGGGTCTTAGCA947440.10452926575064252No Hit
GGAGAACTCGCCAGAC939840.10369077210491838No Hit
GACCGACAGGGATCCA933720.10301556406388789No Hit
CACCACTGTACGCAAG933530.10299460172274477No Hit
TAGACTGCAATTCGTG907170.10008635270941735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)