FastQCFastQC Report
Wed 8 May 2024
EGAF00007834595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50477144
Total Bases807.6 Mbp
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAACGGTGCAACAG2802580.5552176248323399No Hit
GTGCTGGCACTGTTAG1866070.36968612962730224No Hit
TGGTCAATCACCCTTG1423780.2820642942873313No Hit
TAGGAGGTCGGACGAA1299170.2573778738353343No Hit
GGAGTAGAGCAGAAAG1263920.2503945151888942No Hit
GGTGAAGGTAGGTCTT1203290.2383831383170173No Hit
GAGGTCCTCACTTACT995610.1972397645952394No Hit
CAAGGCCCAATTCGTG990230.19617393567274727No Hit
TTGCTATAGTCTGTGT906390.17956443811480302No Hit
TCGAGCGAGAAATGGG900940.17848474152975058No Hit
GTGCTGGAGAAGAGTG844660.16733514083126416No Hit
TTCGTTACAGTAACCT815710.16159987181525165No Hit
CAAGCTATCTGCTACC787050.15592205454413188No Hit
AATGTCGTCTTTATCG784350.15538715898823435No Hit
TCCATCGCACACACAT779060.15433915991760547No Hit
ATCCTCGAGACCCTAT774760.15348728921747237No Hit
TAGGTCAAGCCATGGA760340.15063055073004922No Hit
ACTACGATCACGATTG746700.14792833762544094No Hit
AACCTGACAAGATGCG717220.14208807059290043No Hit
AGTGTACCAAGCCAGA712970.14124610536602467No Hit
TTCATTGAGGTGTCGA709370.14053291129149462No Hit
CCACAGGTCTCCCTTT707360.14013471126654867No Hit
GGAGTAGTCGTTCAGA696380.13795946933923203No Hit
TGACAACGTATCAGCT689720.13664006030135145No Hit
CGTAAACAGGGATCCA680340.13478179351827038No Hit
ACGTGGCTCCAGGTAT670520.1328363585705245No Hit
GCATTGATCGGTCTAA670230.13277890682563182No Hit
TACAGCAGTCTGGATT668850.13250551576372863No Hit
GCTCCTAGTGCGTCCA666940.1321271266852974No Hit
TCAGCTCTCTCTATCA663820.13150902515403803No Hit
ATGTACGTCAGGGTTT662220.13119205000980244No Hit
TACTGCCAGCACACCC648890.1285512508393898No Hit
TGCCTGTGTTTGTAGC646250.1280282418514011No Hit
GAATCTGAGTCTCCAA635840.12596592231921838No Hit
GCAGATTTCATTCTCA631350.1250764108207073No Hit
AGCCTTCAGCCATTCA628660.12454349635946121No Hit
ACAAAGACATCGTACA625860.12398878985704896No Hit
TCACAAGCAGCTGATT624460.12371143660584283No Hit
GTACTTTCAATAGCGG622180.12325974702530713No Hit
ATTGTCTAGTTCGCGC602120.1192856711544536No Hit
TAGCATGGTCTGTGTA592130.1173065575976327No Hit
TGACAACTCGCTATTT589950.11687467896361174No Hit
GGCGAAAAGAGAGTAG585050.11590394258439028No Hit
GATGGCCCAGCTATAC584480.11579102018925636No Hit
ACAAACCTCGAACACT573920.11369898423730154No Hit
CACAGATCAGCAAACG571580.113235408088857No Hit
GAAAGTACACCCTTAC571200.11316012649210105No Hit
GCTCGAGAGATATGTG565570.11204477020332211No Hit
TCTAGTTTCGAGGTAG564200.11177336023607042No Hit
AACATCGCATCGCCTT559810.11090365968407404No Hit
TGATTTCTCGGTCAGC539690.10691769724531165No Hit
TTTGGCCTCACCCTTG537930.10656902458665253No Hit
TCAATTCTCGATAGGG537610.1065056295578054No Hit
TAGCACATCCGGCTGA531370.10526942649528666No Hit
TGGCGCAGTTACCACA528630.10472660656078324No Hit
GAAGTGGCAGTCAGAG525680.1041421836385989No Hit
CAGCTGGCACCGTTGG521500.10331408607428343No Hit
AGACAAAGTGCCCGAT516670.1023572173576223No Hit
ACCGAATAGTTATGAG513860.10180052976055856No Hit
GAAGTCTGTCAACTAC511300.10129336952978164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)