FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007834598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007834598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90841331
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCATTGCAGGTAGGT5133210.5650742832026536No Hit
GATCGTAAGAGGCGGA4180560.46020461765360965No Hit
AACATCGCAACGCACC3956450.4355341292830683No Hit
CTACTTACAGCAATGG3817390.42022611932007026No Hit
TACCTATTCCTAAAGC3443690.379088456993216No Hit
TTACCGCTCAGTGGTT3278230.3608742808931322No Hit
TCAGTCCAGTCTGGGA3273650.36037010510116807No Hit
ATATTCCAGCTAACAA3086030.3397165107587426No Hit
TCGATTTTCTCAGATG2803370.3086007183228084No Hit
ACAGACTAGTAGGAAG2605740.2868452026534045No Hit
TACCTATTCACACGTA2478430.272830656785511No Hit
AAGATAGTCCACGCTT2392800.26340433078859227No Hit
ACCCAAAGTGGCATAG2297850.2529520400796417No Hit
ACGGATTTCCTCCATG2285350.25157601444655187No Hit
GCGGGTTAGGAAACTT2190430.24112702619912074No Hit
CCCGTTAAGCGAATAT2181640.24015940497393198No Hit
TTGCCCAAGATGCGAC2176040.23954294549030772No Hit
ATCCTCGTCGGTGATT2112200.2325153073769912No Hit
CGGACTGTCAGGCGCT2092440.23034008605620276No Hit
CAATCCCAGGGTCCCT2038830.224438587321007No Hit
CGATGATTCAGAATGA2008690.22112071431450073No Hit
GTCACAAAGAAATCTG2008640.2211152102119684No Hit
AATGGAACACCTGAAT2006810.220913760059284No Hit
CAGTGCGGTCGTAGTT2004720.22068368857343143No Hit
TGCATTTGTACGCAAG1979150.2178688905383828No Hit
CATGCCTGTGCTTCCT1943450.21393896133027815No Hit
ACTATTCCAAGGAGGG1910530.21031506022297272No Hit
GCTTGCTTCACTACCC1885630.20757401716185775No Hit
CTAGGGCAGCTGGAGT1816950.20001358192340887No Hit
GCATTCCGTGGACCAA1791270.19718667486278907No Hit
TCACAGACATTAAGGA1754170.19310263078377837No Hit
AGCCTTCAGCGTTAGG1741740.19173431089423382No Hit
CTCAGAATCCGATTGA1693230.1863942306173387No Hit
TTACCCGGTTTGCATG1690640.18610911810616249No Hit
AGTGCGCTCCACTAGA1651230.1817707844901568No Hit
CTGCTCAAGCGTATCT1630710.17951190081087648No Hit
CAACCAATCGCCTTAC1587430.17474754965886619No Hit
GTTCAAGCAAGCGGTA1525980.16798300764659646No Hit
ACGGATTCAGGTAGGT1509720.1661930735030732No Hit
TTTGCGCTCACTACCC1499400.16505702674039419No Hit
CCCACATAGGCTAAAT1440930.1586205292390531No Hit
ACAAACCTCTATTTCG1405330.1547016082360132No Hit
AATGTCGCACTTGCGG1389800.15299203398946234No Hit
CCACGTTTCTGGACAT1375830.15145418774192115No Hit
TACTGCCTCGCAGATT1351320.14875607668055854No Hit
ATAGGCTCAGAACAGC1344480.14800311545413178No Hit
GAAATGAGTAGGTGAC1301300.14324977250718618No Hit
CTTGAAGTCATCGCTC1258540.1385426640215124No Hit
AATGTCGTCGCCCTTA1224680.13481528578659863No Hit
CACCTTGGTCGAGAAC1221830.1345015519422541No Hit
GGTGTCGCACGAACGA1194240.1314643881648982No Hit
ACTGCAATCTTACGGA1170810.12888516571823458No Hit
CTAACTTAGACTAATG1155510.12720091034333258No Hit
GGGAACAAGTCTCTAG1149680.1265591319880595No Hit
GAACGTTGTCCGGTAC1142920.1258149773256845No Hit
AAAGGATGTGACCAGA1130120.12440592707740049No Hit
CAGTGCGGTATATGGA1095950.12064442340678606No Hit
TGGCAATTCTTCCGTG1072070.1180156640373312No Hit
ATGTCTTAGGCCTCTG1069830.1177690802438815No Hit
CCTATTAAGTTTACGC1063840.11710968876050484No Hit
TCACTCGGTTTGTACG1012090.11141294263951283No Hit
CGCTGGAGTAACGGAC993080.10932028285670979No Hit
CTACTTAGTCACCCGA983370.10825138614492559No Hit
AGGCGTCTCACTAGCA975250.10735751989367044No Hit
CAGGGCTTCGCAAGCC962410.10594406636336054No Hit
CTAGGGCCAATGGCAG961720.10586810974841396No Hit
GGAGAACTCGCCAGAC957020.10535072411037218No Hit
GATCGTAAGTGGACGT955690.10520431498301142No Hit
GCTCACTCACCTATTT954980.10512615672705192No Hit
TTAACGGGTCTTAGCA944130.10393176647752991No Hit
GACCGACAGGGATCCA937200.1031688978665449No Hit
CACCACTGTACGCAAG935810.10301588381614532No Hit
TAGACTGCAATTCGTG913500.10055995326620655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)