FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465978434
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG41686760.8946070667296161TruSeq Adapter, Index 6 (97% over 35bp)
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20819600.44679320931835226No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14014950.3007639190443736No Hit
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6211920.1333091737030903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)