FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465978434
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC45772090.98227914985439Illumina Single End PCR Primer 1 (96% over 33bp)
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18159580.3897085932521933No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13693720.2938702523730959No Hit
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5361130.11505103259778755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)