FastQCFastQC Report
Mon 6 May 2024
EGAF00007838815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459208760
Total Bases69.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG41168080.8965003193754404TruSeq Adapter, Index 6 (97% over 35bp)
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20034820.4362900219934828No Hit
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13420650.29225596654558594No Hit
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6067960.13213946528371975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)