FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495583836
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACAAATTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19565060.39478809797178294No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG15747500.3177565298961849TruSeq Adapter, Index 6 (97% over 35bp)
AGAACAAATTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12629830.25484749668066253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)