FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375498478
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAATACCATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19897800.5299036125520594No Hit
TAAATACCATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14575550.38816535496050664No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCTATCATCTCGTATG12818600.3413755514609569TruSeq Adapter, Index 9 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)