FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492246851
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAATACCATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT29786950.6051222052408823No Hit
TAAATACCATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA22199880.45099079770446315No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG18886230.3836739628020495TruSeq Adapter, Index 7 (97% over 34bp)
TAAATACCATCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5556120.11287263674135722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)