FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502310748
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTATAACCATCTCGTATG14487790.2884228549296341TruSeq Adapter, Index 3 (97% over 35bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13345350.2656791648025815No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7286280.14505522784473646No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5563840.11076490045560403No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5162480.10277462747024478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)