FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502310748
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCGATATCGTGTAGATCTC15495780.3084899150913649Illumina Single End PCR Primer 1 (96% over 31bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12214620.24316859730025125No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7830930.15589811747368781No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC6426960.12794788934120122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)