FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504048031
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCGATATCGTGTAGATCTC15540920.3083222043178659Illumina Single End PCR Primer 1 (96% over 31bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12461510.24722862175013635No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8060200.15990936387568191No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5348060.10610219009069No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5080480.10079356901604483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)