FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465860734
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTGAACTCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17380260.3730784488052603No Hit
TGTTGAACTCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13685330.29376440213138894No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC10796130.23174586763949073Illumina Single End PCR Primer 1 (96% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)