FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483889522
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATTCGTGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21828310.45110110898412886No Hit
CCGATTCGTGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12425360.25678092694885835No Hit
CCGATTCGTGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6349080.13120928871859308No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG5356850.11070398833723867TruSeq Adapter, Index 27 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)