FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467517819
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG51918991.110524302818071TruSeq Adapter, Index 27 (97% over 38bp)
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT14771610.31595822447143984No Hit
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8961410.19168060843473433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)