FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503107307
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG32838890.6527213885207992TruSeq Adapter, Index 7 (97% over 34bp)
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27698010.5505388137803373No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18443580.36659336374933627No Hit
CCGTAAATTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6050260.12025784391956765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)