FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510855210
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG32970440.6453969609118795TruSeq Adapter, Index 7 (97% over 34bp)
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27503160.5383748557639257No Hit
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18390880.36000180951467636No Hit
CCGTAAATTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6055150.11852967105885051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)