FastQCFastQC Report
Mon 13 May 2024
EGAF00007838883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488995761
Total Bases73.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG23530170.48119374188194647TruSeq Adapter, Index 27 (97% over 38bp)
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21231050.4341765653874451No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14286530.29216061036570007No Hit
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5779660.11819448062659177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)