FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469212128
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23700490.5051124765470683No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14386530.3066103611030276No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG10102780.21531370135428382TruSeq Adapter, Index 19 (97% over 37bp)
CCCGAGAGATCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8138030.17344031652992567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)