FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457924625
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGAAACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22633500.49426256559144427No Hit
CCTGGGAAACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13277280.2899446606523945No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG8093580.17674480816575436TruSeq Adapter, Index 7 (97% over 37bp)
CCTGGGAAACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6614990.1444558697842467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)