FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007838892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007838892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457924625
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGGGAAACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19486530.42554012027634464No Hit
CCTGGGAAACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13869760.30288303451687054No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC8871750.19373821619660658Illumina Single End PCR Primer 1 (96% over 31bp)
CCTGGGAAACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5791590.12647474461544844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)