FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545972
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG9310.17052156520847223No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8510.15586879913255625No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6180.11319261793645094No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5590.10238620295546291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)