FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892174
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18660.209152026398438No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG12740.14279725703730436No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10980.12307016344345387No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9560.10715398565750626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)