FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784161
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15220.19409279471945176No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT9680.1234440376402295No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9360.11936324300749464No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA9130.11643017186521644No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG9000.11477234904566792No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA8740.11145670340657085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)