FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences950573
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17120.18010189643509758No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG12500.131499632327028No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10970.11540407733019978No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9790.10299051203852834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)