FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487297
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG11800.24215211667627748No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8260.16950648167339424No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG6810.13975050123436014No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC6470.13277323685555215No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5940.1218969129709397No Hit
ACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA4970.10199118812551687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)