FastQCFastQC Report
Thu 19 Jan 2023
EGAF00007839704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007839704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences954614
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG18180.19044346720245042No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG10730.11240145231475758No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9950.10423061048758975No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC9700.10161175092760005No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9550.10004043519160624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)