FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007846497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17908546
Sequences flagged as poor quality0
Sequence length54
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCAT2014771.1250327078479738No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA561410.31348720326038754No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC459240.25643622882617045No Hit
CTCAGACCGCGTTCTCTCCGTCTCACTCCCCAATACGGAGAGAAGAACGATCAT223630.12487334259297209No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT213960.11947368591509328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)