FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007846510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18796296
Sequences flagged as poor quality0
Sequence length54
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGAT369350.1965014809300726No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACG225950.12020985411168243No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC199200.10597832679374702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)