FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007846543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007846543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15761540
Sequences flagged as poor quality0
Sequence length54
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCAT4554352.889533636941568No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA1224080.7766246191679239No Hit
CTCAGACCGCGTTCTCTTCCTCTCACTCCCCAATACGGAGAGAAGAACGATCAT1023190.6491687994954808No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATC1019880.6470687508961688No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT528750.33546848848526223No Hit
ACTCAGACCGCGTTCTCTTCCTCTCACTCCCCAATACGGAGAGAAGAACGATCA286220.1815939305423201No Hit
CACTCAGACCGCGTTCTCTTCCTCTCACTCCCCAATACGGAGAGAAGAACGATC231990.14718739412519335No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGCTGG167370.10618886225584555No Hit
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATC165800.10519276669665528No Hit
CAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA163110.1034860806748579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)